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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015824475.1_cds_XP_016501906.1_15600
CDS Infomation

[gene=LOC107820192] [db_xref=GeneID:107820192] [protein=putative pectate lyase 2] [protein_id=XP_016501906.1] [location=complement(join(49911..50126,50259..50388,50476..50579,50829..51545))] [gbkey=CDS]
Sequence

ATGTCTTCTTTAGCACTTGTACTTACTCTTCTTTTTTTGGGTATCTCAACTTTACAAGCT
GAGTATTATGCACCTCTTCCTTATAGTTATGCACCTCTTCCTTATAGTTATGCACCTAAT
ACTAAAAAAACTATGAATGTGATTGATTCTTGTTGGCGTACCAAATCAAATTGGGCCAAG
AACCGCCGTGCATTGGCTGATTGTGCCGTCGGCTACGGCAAAGCTGCTATCGGAGGTAAA
TTTGGTGCCATATATGTCGTTACTAATCCATTGGACGACCCCGTAAACCCTAAACCAGGT
ACACTAAGATATGGTGTAATCCAATCCAAACCACTATGGATTACTTTCGCCAAAAACATG
GTTATAACACTAAAGAATGAGCTTATGATAAATAGTTACAAGACTATAGATGGAAGAGGA
GCTAAAGTGGAGATTGCATATGGACCTTGTATCACAATTGCACATGTTAGCCATGTGATT
ATACATGGGATTAGCATCCATGATTGTAAGCCTGGTAAGAAGGGCATTGTGCGGGATAGT
CCGGTGCATGCCGGCCATCGTGGCGGCGCTGACGGAGACGGTATTGATATTTTTCAATCT
TCTCATATTTGGATCGACCATTGCTATCTTGCACGTTGCACCGATGGTCTTATTGACGTT
ATTCATGCTTCTACTGCTGTTACCATTTCCAACAACTACTTCACTCAGCATGACAAAGTT
ATGTTATTTGGGCACAATGATAACAATATAGAAGACAAGGTTATGAAAGTCACGGTAGCC
TTCAACTACTTTGGCCCTGGTTTAATAGAACGAATGCCAAGAGTTAGGCTAGGTTATGCT
CATGTGGCCAACAATCGCTACGAAAAATGGTTGATGTATGCTATTGGTGGAAGTGCAAAT
CCAACCATCTTCAGTGAAGGAAATTATTTCATGGCATATAAATCCACACAAGTTACGAAG
AGGGAAGCAAAGAATGGGTGGAAGAATTGGAAGTGGAGGTCTTCAAAGGATAAATTCATG
AATGGAGCATATTTTATACCATCTGGATATGGAAGTACAAATCCATATTACTCAAAGGCT
CAGTCATTTCCTGTGGCTGATGGATCTATTGTTCCTTCTTTAACTGCTGATGCCGGACCT
TTACGTTGCACATCCTATAAATGTTAA

Peptide Sequence

PEP ID

XP_016501906.1
PEP Infomation

PREDICTED: putative pectate lyase 2 [Nicotiana tabacum]
Sequence

MSSLALVLTLLFLGISTLQAEYYAPLPYSYAPLPYSYAPNTKKTMNVIDSCWRTKSNWAK
NRRALADCAVGYGKAAIGGKFGAIYVVTNPLDDPVNPKPGTLRYGVIQSKPLWITFAKNM
VITLKNELMINSYKTIDGRGAKVEIAYGPCITIAHVSHVIIHGISIHDCKPGKKGIVRDS
PVHAGHRGGADGDGIDIFQSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHDKV
MLFGHNDNNIEDKVMKVTVAFNYFGPGLIERMPRVRLGYAHVANNRYEKWLMYAIGGSAN
PTIFSEGNYFMAYKSTQVTKREAKNGWKNWKWRSSKDKFMNGAYFIPSGYGSTNPYYSKA
QSFPVADGSIVPSLTADAGPLRCTSYKC

Transcript Sequence

Gene sequence data has not been registered.